KJEM220 – Molecular Modelling
This page is for the University of Bergen KJEM220 course (Molecular Modelling).
All the information about this course is available at https://www.uib.no/en/course/KJEM220 and the student webpage is https://mitt.uib.no/courses/21639.
This page is just to share my content of the KJEM220, especially my PPTX slides that are too big to be uploaded on mit.uib.no. My slides are password protected for obvious reasons so they are just read-only. You will need also need a password to open the PPTX (to avoid that some sites capture the slides automatically).
LECTURES
PASSWORD : kjem220
I will not give the second password to keep the slides read-only. Just click on "read-only" when the second password is asked.
- Lecture 1: Concepts in proteomics.
- Lecture 2: Molecular Mechanics.
- Lecture 3: Geometry optimization.
- Lecture 4: Molecular Dynamics
- Lecture 5: MD Analysis and other MD Methods
PRACTICAL
- Practical 1: Hands-on MD outputs files, pdf file, material
- Practical 2: Running MD, pdf file, material
- Practical 3: Analyzing MD, pdf file, material
Special: Running MD + Analyzing in a single file, improved for BioCat course: pdf file
GROMACS TUTORIAL
You can use my "practical 2" material for GROMACS tutorial. You will find useful information about MD With gromacs, parameters, restraints… (pdf file, material)