Resume

Thibault Tubiana, PhD
PhD in Biochemistry and Structural Biology

Bioinformatics, Molecular Dynamics, Homology Modelling, Molecular Visualization.

Education
PhD in Biochemistry and Structural Biology
2014-2017
Institute for Integrative Biology of the Cell
Understand the Norovirus Capsid Assembly under the guidance of Dr. Stephane Bressanelli and Dr. Yves Boulard. See more at :
MSc degree in Bioinformatics
2012-2014
Paris Diderot University
Obtained with honors ("Good")
  • structural bioinformatics (modeling and molecular dynamics, docking, drug design)
  • Genomics bioinformatics and functional genomics
  • Systematic integrative bioinformatics and proteomics
  • Data analysis, training data
  • Advanced programming, advanced algorithmic
BSc degree in Bioinformatics
2009-2012
Paris Diderot University
Obtained with honors ("fairly well")
  • Structure and integration of macromolecules
  • Genetics and molecular biology
  • Programming and algorithmic
  • Database
  • Biological statistics
Scientific Bachelor
2005-2009
High School - Domont Paris
Option Biology, obtained with honors (fairly well)
Experience
Post doctoral position
From November 2017
Servier, Croissy sur Seine
Increase our knowledge on 3D bioisosteric fragments, directed by Dr. Arnaud Gohier and Dr. Pierre Ducrot
PhD Student
November 2014 - October 2017
Institute for Integrative Biology of the Cell
This project aims to better understand the Norovirus Capsid Assembly under the guidance of Dr. Stephane Bressanelli and Dr. Yves Boulard.
Master's internship (2nd year)
January - July 2014
Laboratoire de Biochimie Théorique (under the direction of Dr. Marc Baaden) - Paris (France)

Development of new standardized visualizations for polysaccharide for a molecular visualization software based on a 3D game engine (Unity) : UnityMol

Researcher Assistant
June - July 2013
Computational Biology Unity (Under the direction of Pr. Nathalie Reuter) - Bergen (Norway)

Study of the existence of "aromatic cages" on a peripheral proteins dataset, allowing the binding between the protein and a phosphatidylcholine on a cellular membrane.

Master's Intership (1st year)
March - Mai 2013
Computational Biology Unity (Under the direction of Pr. Nathalie Reuter) - Bergen (Norway)
Study of amino acids distribution in peripheral and transmembrane proteins.
Summer intenship
July 2012
MTI (Molécules Thérapeutiques In Silico) - Paris (France)
Development of a cooperative platform of serious gaming for university undergraduates
Research discovery internship
April 2010
Unité postulante de pathogenèse de Helicobacter, Institut Pasteur - Paris (France)

Enzyme assay of the amount of ammonia produced by H. pylori living, wild-type and mutant, depending to the substratewhich is provided

Prizes
Skinner prize - Faraday Discussion 169 (Nottingham - England)
2014
Best Student poster
Best student poster for Sweet UnityMol, molecular graphics for glycoscience.
Language

French   : Mother tongue
English  : Fluent
German : Basic

Skills
Programming languages ___________________
Python
R
C#
C++
LaTeX
C
Java
Bash
Softwares ___________________
Pymol
VMD
Amber
Gromacs
Pipeline Pilot
Unity3D
AutoDockTools
Microsoft Office / Open Office

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