Resume

 
Resume
PhD in Biochemistry and Structural Biology
Skills
Programming languages
Python
R
C#
C++
LaTeX
C
Java
Bash
Softwares
Pymol
VMD
Amber
Gromacs
Pipeline Pilot
Blender
Unity3D
AutoDockTools
Microsoft Office / Open Office

Bioinformatics, Molecular Dynamics, Homology Modelling, Molecular Visualization.

Research Experience
Institute of Integrative Biology of the Cell (I2BC, CNRS/CEA)
Post doctoral positionfrom April 2022

Structure, modeling and membrane interactions of hepatitis E virus proteins

University of Bergen, Norway
Post doctoral positionJune 2019 - March 2022

Study peripheral binding protein to update the current model for peripheral membrane binding.

Servier, Croissy sur Seine
Post doctoral positionNovember 2017 - May 2019

Increase our knowledge on 3D bioisosteric fragments, directed by Dr. Arnaud Gohier and Dr. Pierre Ducrot

Institute for Integrative Biology of the Cell
PhD StudentNovember 2014 - October 2017

This project aims to better understand the Norovirus Capsid Assembly under the guidance of Dr. Stephane Bressanelli and Dr. Yves Boulard.

Laboratoire de Biochimie Théorique (under the direction of Dr. Marc Baaden) - Paris (France)
Master's internship (2nd year)January - July 2014

Development of new standardized visualizations for polysaccharide for a molecular visualization software based on a 3D game engine (Unity) : UnityMol

Computational Biology Unity (Under the direction of Pr. Nathalie Reuter) - Bergen (Norway)
Researcher AssistantJune - July 2013

Study of the existence of "aromatic cages" on a peripheral proteins dataset, allowing the binding between the protein and a phosphatidylcholine on a cellular membrane.

Computational Biology Unity (Under the direction of Pr. Nathalie Reuter) - Bergen (Norway)
Master's Intership (1st year)March - Mai 2013

Study of amino acids distribution in peripheral and transmembrane proteins.

MTI (Molécules Thérapeutiques In Silico) - Paris (France)
Summer intenshipJuly 2012

Development of a cooperative platform of serious gaming for university undergraduates

Unité postulante de pathogenèse de Helicobacter, Institut Pasteur - Paris (France)
Research discovery internshipApril 2010

Enzyme assay of the amount of ammonia produced by H. pylori living, wild-type and mutant, depending to the substratewhich is provided

Teaching experience
Institute of Integrative Biology of the Cell (I2BC, CNRS/CEA)
Molecular Modelling and Molecular Visualisation2023

Introduction to molecular modelling and visualisation to the I2BC scientific staff (structure modelling and analysis with AlphaFold and chimeraX).

More info here : https://bioi2.i2bc.paris-saclay.fr/training/visu-struct/

University of Bergen, Norway
KJEM220 - Applied Molecular Modelling2020-2021
  • Joint administrative responsibility for the course
  • Exam preparation
  • Preparation and execution of lectures and practical exercises in Molecular Mechanics

More info about the full content of the course on this page https://tubiana.me/teaching/kjem220-molecular-modelling/

University of Bergen, Norway
BioCAT- Molecular Modelling2020
  • Preparation of the molecular dynamics practicals with Gromacs
  • Assistance with other practical exercises (molecular mechanics part
University of Bergen, Norway
MOL204 - Bioinfomatics2019
  • Bioinformatic practicals on Sequence and structure databases (how to search for protein sequences/structures, blast algorithms and scoring)
Paris Diderot University (Paris cité)
Teaching during PhD2014-2017
  • Python programming (M1/M2): Computer-based tutorials, design and assessment of personal projects and exams (jury member).
  • Oral evaluation (M1/M2): Evaluation of Python projects or bibliographical seminars.
  •  Pymol training: visualization and structural biology practical exercises.
  •  Biostatistics via R Commander: Training in the use of a graphical interface to the R statistical tool, R Commander.
Education
Institute for Integrative Biology of the Cell
PhD in Biochemistry and Structural Biology2014-2017

Understand the Norovirus Capsid Assembly under the guidance of Dr. Stephane Bressanelli and Dr. Yves Boulard. See more at :


Paris Diderot University
MSc degree in Bioinformatics2012-2014

Obtained with honors ("Good")


Paris Diderot University
BSc degree in Bioinformatics2009-2012

Obtained with honors ("fairly well")


High School - Domont Paris
Scientific Bachelor2005-2009

Option Biology, obtained with honors (fairly well)

Prizes
Best Student poster
Skinner prize - Faraday Discussion 169 (Nottingham - England)2014

Best student poster for Sweet UnityMol, molecular graphics for glycoscience.

Language

French   : Mother tongue
English  : Fluent
German : Basic

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